PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FH6AP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 407aa    MW: 43503.4 Da    PI: 6.0344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FH6APgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12227272555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Araip.FH6AP 227 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 272
                  99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17220282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-13220276No hitNo description
PROSITE profilePS5088817.39222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16224281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9227272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MQPCSREMQS LNSLFNNQQQ IQMDPATSQE DDFIKQMLST IPPPPPPSWN LDHTPPNPKP  60
YWLDNDNVAF PNYDDPSTLA SKFRNHQITA NSSSKAAAAA LLLQQQLLMT RGLSGADSAI  120
LHHMFDSSQN DVVDASSSSF KSPNPTSADG SVQALYDGFT GSLQGAALAS NQTHHFQHPQ  180
VQTSSNPNQM QGQGQGTSQG GNPNPNPNPG QPKQRVRARR GQATDPHSIA ERLRRERIAE  240
RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADINSEG  300
GGDCVQTNGN QTAGASSSND SLTMTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI  360
STATATCHPR NPIMNPTDGP SSPGMSVLTV QSANGDAVKD ATSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200149.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9ZUG92e-87BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0S3RH891e-166A0A0S3RH89_PHAAN; Uncharacterized protein
STRINGGLYMA09G14380.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-60LJRHL1-like 1